RetrogeneDB ID: | retro_tsyr_1293 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_38438:10336..11050(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSTSYG00000006100 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 75.41 % |
Parental protein coverage: | 97.19 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | EKKKKVPAVPETLKKKRRNFAELKLKRLRKKAQKMLRKARRKLIY-EKAKHYHKEYRQMYRTEIRMARMA |
EKKKKVPAVPETLKKK..NF.ELK...L.K...KML..ARRKLIY..KAKHY.K.YRQMYRTEI.MARMA | |
Retrocopy | EKKKKVPAVPETLKKK*WNFTELKIRHLKKFVPKMLQ*ARRKLIY>KKAKHYRKGYRQMYRTEI*MARMA |
Parental | RKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYP |
RKAGNFY.PAEPK.AF.IRIRGIN.VS.KV.K.LQL.RL.QIFN.TF.KLN..SINMLR.VEPYI.WGY. | |
Retrocopy | RKAGNFYGPAEPKSAFIIRIRGINSVSRKVQKALQL-RLCQIFNRTFFKLNQTSINMLRMVEPYITWGYL |
Parental | NLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSS |
NLKSVNELIYK.GY.KINKK..ALT...LI..SL.KYGIICMEDLIHEI..VGK.FKE..NFL.P.KLSS | |
Retrocopy | NLKSVNELIYKCGYEKINKKQTALTESGLIVQSLDKYGIICMEDLIHEI*IVGKCFKETHNFL*PLKLSS |
Parental | PRGGMKKKT-THFVEGGDAGNREDQINRLIRRMN |
...GMKK.T.TH.VE.GDAGNRE.QINRLIR..N | |
Retrocopy | ---GMKKIT<THIVEDGDAGNRENQINRLIR*IN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |