RetrogeneDB ID: | retro_rnor_1307 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:47707475..47708087(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 79.33 % |
Parental protein coverage: | 78.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLR |
K.RRK.IYEK.KHYHKEYRQM..TE..MA..ARKAGNFYVPAEPKLAFV.RI.GI.GVSPKV.KVLQL.R | |
Retrocopy | KTRRKFIYEKVKHYHKEYRQMDLTESHMAKIARKAGNFYVPAEPKLAFVTRI*GISGVSPKVCKVLQLFR |
Parental | LRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGY-GKINKKR-IALTDNSLVARSLGK |
L.Q.FNG.FVKLNKASVN.LRIVEPYIAW..P.L.S.N.LIYK.....K..K.R.IALTDNSL.A.SLGK | |
Retrocopy | LQQLFNGSFVKLNKASVNTLRIVEPYIAWENPDLNSANALIYKQEW<AKSIKSR<IALTDNSLIAQSLGK |
Parental | FGIICMEDLIHEIYTVGK-RFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
FGIIC.EDLIHEI..VGK..FKEANNFLWPFKLS.P.GGMK.KTTHFVEGGDAGNREDQINRLIRRMN | |
Retrocopy | FGIICTEDLIHEICVVGK<MFKEANNFLWPFKLSCP*GGMKRKTTHFVEGGDAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .07 RPM | 183 .42 RPM |