RetrogeneDB ID:

retro_tsyr_2109

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_91974:425..1037(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL7
Ensembl ID:ENSTSYG00000006100
Aliases:None
Description:ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]


Retrocopy-Parental alignment summary:






>retro_tsyr_2109
CTTTCAAAGGCAAGGAGGAAACTCATCAGTGAAAAAGCTGAGCACCATCATGAGGAATTCAGGCAGGTGTACAGAACTGA
GATTTGAATGGCTAGGATGGCAAGAAAAGTGGGCAACTTCCGTGGACCTGCAGAACCCAAATTGGCAACTGTCATCAGGA
TCAGAGGCATCAGCGATGTGAGTCCAATGACCCAGATGGTGTTGCAGTTTCTTCGTCTTCATCAGATCTTCAACAGAACC
TGTGCTAAGATCAGCAAGGCTTCAATTACTATGCTAAGGATTGTAGAACCATATGTTGCATGGGGAAACCCAAGCCTGAA
GTCAGTGAATGAGCTAATCTACAAGCTTGGTTATTGCAAAATTAATAAGAGGCGAATTACCTTAACGGCTAAGGCTTTGA
TTGCTCGACCTCTTAGTAAATATGGCATCATCTGCATGGAGGATCTGATGTATGAGATCTCTACTATTGGAAAACGCTTC
AAAGAAGCAAATAATATCCTCTGGCCCTTCAAATTATCTTCTCCATGAGGTGGAATGAAGAAAGAGACCACTCATTTTGT
AGAAGGTGGAGATGCTGGCAATAGAAAAGACCAGATCAACAGGCTTATTAGA

ORF - retro_tsyr_2109 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.45 %
Parental protein coverage: 81.93 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQL
L.KARRKLI.EKA.H.H.E.RQ.YRTEI.MARMARK.GNF..PAEPKLA.VIRIRGI..VSP....VLQ.
RetrocopyLSKARRKLISEKAEHHHEEFRQVYRTEI*MARMARKVGNFRGPAEPKLATVIRIRGISDVSPMTQMVLQF
ParentalLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGK
LRL.QIFN.T..K..KASI.MLRIVEPY.AWG.P.LKSVNELIYK.GY.KINK.RI.LT...LIAR.L.K
RetrocopyLRLHQIFNRTCAKISKASITMLRIVEPYVAWGNPSLKSVNELIYKLGYCKINKRRITLTAKALIARPLSK
ParentalYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIR
YGIICMEDL..EI.T.GKRFKEANN.LWPFKLSSP.GGMKK.TTHFVEGGDAGNR.DQINRLIR
RetrocopyYGIICMEDLMYEISTIGKRFKEANNILWPFKLSSP*GGMKKETTHFVEGGDAGNRKDQINRLIR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_2109 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 266 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000002013922 retrocopies
Callithrix jacchus ENSCJAG000000076861 retrocopy
Equus caballus ENSECAG000000091881 retrocopy
Homo sapiens ENSG0000014760449 retrocopies
Latimeria chalumnae ENSLACG000000035711 retrocopy
Macropus eugenii ENSMEUG000000163199 retrocopies
Microcebus murinus ENSMICG000000028808 retrocopies
Macaca mulatta ENSMMUG000000051411 retrocopy
Monodelphis domestica ENSMODG000000071364 retrocopies
Mus musculus ENSMUSG0000004371615 retrocopies
Otolemur garnettii ENSOGAG000000039032 retrocopies
Pongo abelii ENSPPYG0000001867150 retrocopies
Rattus norvegicus ENSRNOG0000000699227 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000000458618 retrocopies
Tupaia belangeri ENSTBEG000000023011 retrocopy
Tarsius syrichta ENSTSYG0000000484816 retrocopies
Tarsius syrichta ENSTSYG00000006100 25 retrocopies
Tursiops truncatus ENSTTRG0000000907416 retrocopies



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