RetrogeneDB ID: | retro_mmus_3547 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:153656929..153657373(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083488 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSMUSG00000043716 | ||
Aliases: | Rpl7, Rpl7a, Surf-3 | ||
Description: | ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073] |
Percent Identity: | 85.14 % |
Parental protein coverage: | 54.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALT |
..PKVRKVLQLL.LRQIFNGTFVKLNKAS.NML.IV.PY.AWGYPNLKSVNELIYK.GYGKINKK..ALT | |
Retrocopy | MEPKVRKVLQLLCLRQIFNGTFVKLNKASNNMLQIVKPYTAWGYPNLKSVNELIYK*GYGKINKKWVALT |
Parental | DNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI |
D.SLIA..LGKFGIICMEDL.HEIYTVGK.FKE.NNFLW.FKLSSPRGGMKKKTTHFVEG.DAGN.E.QI | |
Retrocopy | DDSLIAQPLGKFGIICMEDLGHEIYTVGKCFKEVNNFLWSFKLSSPRGGMKKKTTHFVEG*DAGNMEYQI |
Parental | NRLIRRMN |
N.LIR.MN | |
Retrocopy | NMLIRQMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 108 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 87 .10 RPM |
SRP007412_heart | 0 .00 RPM | 118 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 156 .36 RPM |
SRP007412_liver | 0 .00 RPM | 136 .76 RPM |
SRP007412_testis | 0 .00 RPM | 77 .30 RPM |