RetrogeneDB ID: | retro_btau_1627 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:98079452..98079876(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSBTAG00000020139 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q58DT1] |
Percent Identity: | 87.32 % |
Parental protein coverage: | 56.85 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKA-KHYHKEYRQMYRTEI |
ME.AEEKKKKVP.VPETLKKK.KNF.ELKIK.LRKKFAQKMLRK.RRKLIYEKA.KHYHKE.R.MYRTEI | |
Retrocopy | MESAEEKKKKVPGVPETLKKK*KNFTELKIKHLRKKFAQKMLRKGRRKLIYEKA>KHYHKEKRRMYRTEI |
Parental | RMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPY |
.MARMA.KA.NFYVP.EPKLAFVIRIRGINGVSPKV.KVLQLL.L.QIFN.TFVKLNKASINMLRIVE.Y | |
Retrocopy | QMARMA*KACNFYVPVEPKLAFVIRIRGINGVSPKV*KVLQLLHLWQIFNSTFVKLNKASINMLRIVESY |
Parental | IA |
IA | |
Retrocopy | IA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 178 .37 RPM |
ERP005899_muscle | 0 .00 RPM | 1258 .39 RPM |
SRP017611_brain | 0 .00 RPM | 104 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .03 RPM |
SRP017611_liver | 0 .00 RPM | 138 .03 RPM |
SRP030211_testis | 0 .02 RPM | 222 .08 RPM |