RetrogeneDB ID: | retro_rnor_1944 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:183459432..183460112(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031725 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 91.67 % |
Parental protein coverage: | 87.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEI-RMARMARKAGNFYVPAEPKLA |
RRNFAELKVKRLRKKFALKT.RKARRKLIYEKAKH.HKEYRQMYRTEI..MAR.AR.AGN.Y.PAEP.LA | |
Retrocopy | RRNFAELKVKRLRKKFALKTVRKARRKLIYEKAKHSHKEYRQMYRTEI<SMARTARRAGNVYAPAEPELA |
Parental | FVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYG |
FVIR.RGI.GVSPKVRKVLQLLR.RQI..GTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYG | |
Retrocopy | FVIRARGISGVSPKVRKVLQLLRPRQILHGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYG |
Parental | KINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEG |
KINKK.IALTDNSL.ARSLGKFGIICMEDLIHEIY..GKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEG | |
Retrocopy | KINKKHIALTDNSLIARSLGKFGIICMEDLIHEIYIIGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEG |
Parental | GDAGNREDQINRLIRRMN |
G.AGNREDQINRLIRRMN | |
Retrocopy | GNAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .07 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |