RetrogeneDB ID: | retro_rnor_2304 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:86427283..86427715(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 77.08 % |
Parental protein coverage: | 55. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | KKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHY-HKEYRQMYRTEIRMARMA |
K.KK..AVPETLKKK.RN.AELKVKRLRKKF.LKTL.KARRKLI..KAKH..HKE.RQMY.TEIRMARM. | |
Retrocopy | KEKKFAAVPETLKKK*RNIAELKVKRLRKKFVLKTL*KARRKLICKKAKHHSHKEFRQMYQTEIRMARMS |
Parental | RKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYP |
RKAGN.YV.AEPKLAFVI.IRGINGVS.KVRK.LQLLR.R.I..GTF.K.NKA..N.LRIVEPYI....P | |
Retrocopy | RKAGNVYVTAEPKLAFVIGIRGINGVSTKVRKALQLLRPRKILHGTFAKPNKAPINVLRIVEPYIVCE*P |
Parental | NLKS |
NL.S | |
Retrocopy | NLVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |