RetrogeneDB ID: | retro_rnor_2025 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:242172181..242172934(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 72.14 % |
Parental protein coverage: | 99.62 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | EAVPEKKKKVAAAPGTLKKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHK |
EAVPEKKKKVAA.P.TLK.K.VPA..ETL.K......ELKVK..R.K.ALK.L.K.R.KLI.EK...... | |
Retrocopy | EAVPEKKKKVAAVPETLKTK-VPAESETLRKAK----ELKVKHQRNKIALKILQKSRQKLI*EKEEY--Q |
Parental | EYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKAS |
E.RQM..TEIRM..MA..AGN.YVPA.PKLA..IRI.GINGVSPK.R.VLQLL.L..IF..TF.KLNKAS | |
Retrocopy | E*RQMDQTEIRMTGMAS*AGNVYVPAGPKLALAIRIPGINGVSPKGRTVLQLLHLLKIFSCTFAKLNKAS |
Parental | VNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINK-KRIALTDNSLVARSLGKFGIICMEDLIHEIYTVG |
VN.L.IV.PYIAWG.PNLKSVNEL.Y..GYGKI...KRIALTD.SL.A.SLGKFGIICMEDLIHEIYTVG | |
Retrocopy | VNTLGIVGPYIAWGCPNLKSVNELTYNCGYGKIST<KRIALTDSSLIA*SLGKFGIICMEDLIHEIYTVG |
Parental | KRFKEANNFLWPFKLSSPRGGMKK-KTTH-FVEGGDAGNREDQINRLIRRMN |
KRFKE.NN.LWPFKLSSP.G.MKK.KT.H..VEGG.AGNRE.QI.RLIRR.N | |
Retrocopy | KRFKETNNSLWPFKLSSP*GRMKK<KTAH<LVEGGEAGNREEQIDRLIRRVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |