RetrogeneDB ID: | retro_rnor_1745 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:53664338..53664866(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 74.72 % |
Parental protein coverage: | 67.69 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASV |
YRQ...TEI.M.RMARK..N.YVP.EP..AFVIRI.GINGVS..V.KVLQLL.L.Q.FN.TFVKLN..S. | |
Retrocopy | YRQIHGTEIGMTRMARKIANIYVPEEPNWAFVIRI*GINGVSLEVCKVLQLLNLLQTFNDTFVKLNRPSI |
Parental | NMLRIVEPYIAW-GYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGK |
NMLRIVE.YIAW.GYPNLKSVN.LIYK.GYGKI..K.IAL.DNSL.A.SL.KFGIICME.L.H.IY.VGK | |
Retrocopy | NMLRIVELYIAW<GYPNLKSVNDLIYK*GYGKIS*K*IALEDNSLIAQSLVKFGIICMENLMHKIYPVGK |
Parental | RFKEANNFLWPFKLSSPRGGMKKKT-THFVEGGDAGNR |
.FKEA.N.LWPF...SPRGGMKK.T.THFVEGGDAGNR | |
Retrocopy | HFKEASNLLWPFQFPSPRGGMKKTT>THFVEGGDAGNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_561 |