RetrogeneDB ID: | retro_tsyr_191 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_4950:786..1277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSTSYG00000006100 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 72.02 % |
Parental protein coverage: | 65.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RNAREKK-KKVPAVPETLKKKRRNFAE-LKLKRLR-KKAQKML-RKARRK-LIYEKAKHYHKEYRQMYRT |
R...EKK.KK..AVPET.......F...LK.K.LR.K...KML..KARRK.L.YEKAKHYHKEYRQMYRT | |
Retrocopy | RGFKEKK<KKIFAVPETXXXXEKDFSQ>LKIKHLRKKFCPKML>KKARRK>LFYEKAKHYHKEYRQMYRT |
Parental | EIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVE |
E..MARMARK.GNF.VPAEPKLAFV.RI....GVSPKV.KVLQLLR.RQIF.GTFVK.NKAS.NMLRI.E | |
Retrocopy | EV*MARMARKTGNFFVPAEPKLAFVLRISVVSGVSPKVQKVLQLLRHRQIFSGTFVKFNKASVNMLRIIE |
Parental | PYIAWGYPNLKSVNELIYKRGYGKINKK |
PYIAWGYP.L.SVNELI.K.GYG..NKK | |
Retrocopy | PYIAWGYPYL-SVNELICKHGYGNMNKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |