RetrogeneDB ID: | retro_rnor_929 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:73592425..73593063(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 69.63 % |
Parental protein coverage: | 81.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | RKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSP |
R..FA....R..R.KL.................TEIR.AR.ARK.GN.YV.A.PK..FVIRIRG.NGV.. | |
Retrocopy | RRNFAELKVRRLRKKLALKTPRKARRKLIYEMATEIRKARTARKPGNLYVHADPK*VFVIRIRGVNGVKT |
Parental | KVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIA-LTDN |
KVRKVL.LLR.RQI..G.FVKL.KASVNMLR.VEPY.A.GYP.LKSVN.LIY.RGYGKINKK.IA.LTDN | |
Retrocopy | KVRKVLHLLRPRQILHGAFVKLGKASVNMLRTVEPYNA*GYPSLKSVNALIYRRGYGKINKKQIA<LTDN |
Parental | SLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINR |
SL.ARSLG.FG.ICMEDL.HE..TVGKRFKEANNFLWPFKLS.P.GGMKKKT..FVE...AGNR.DQINR | |
Retrocopy | SLIARSLGRFGTICMEDLTHEVDTVGKRFKEANNFLWPFKLSFP*GGMKKKTPRFVESRAAGNRDDQINR |
Parental | LIRR |
LIRR | |
Retrocopy | LIRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .28 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |