RetrogeneDB ID: | retro_btau_1616 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:67613384..67614128(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSBTAG00000020139 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q58DT1] |
Percent Identity: | 90.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
MEG.EEKKKKVPAVPET...KRKNFAELKIK.LRKKFAQKMLRKARRKLIYEKAKHY.KEYRQMYRTEI. | |
Retrocopy | MEGGEEKKKKVPAVPETFRNKRKNFAELKIKQLRKKFAQKMLRKARRKLIYEKAKHYQKEYRQMYRTEI* |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
MAR.A.KA.NFYVP.EPKLAFVIRIRGINGVSPKV.KVLQLLRLRQIFNGTFVKLNKASINMLRIV.PYI | |
Retrocopy | MARVAQKASNFYVPVEPKLAFVIRIRGINGVSPKVQKVLQLLRLRQIFNGTFVKLNKASINMLRIVKPYI |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP |
AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIA..L.KYGIICMEDLIH.IYT.GK.FKEA.NFLWP | |
Retrocopy | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIA*YLRKYGIICMEDLIHKIYTIGKHFKEAKNFLWP |
Parental | FKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
FKLSSP.G.MKKKTTHF.EGGDAGNREDQINRLIRRMN | |
Retrocopy | FKLSSPLGVMKKKTTHFAEGGDAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 178 .37 RPM |
ERP005899_muscle | 0 .58 RPM | 1258 .39 RPM |
SRP017611_brain | 0 .00 RPM | 104 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .03 RPM |
SRP017611_liver | 0 .00 RPM | 138 .03 RPM |
SRP030211_testis | 0 .02 RPM | 222 .08 RPM |