Parental gene:

ENSCJAG00000015267

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:2634618..2638003(+)


>ENSCJAG00000015267
CCCCCGGAGGATCTAGGCGCCGAATCTCACCCGCGGCCACGGCCAAAGCCGGGGATGGGGAACCGCGGTGGCTTCCGCGG
AGGTTTTGGCAGTGGCATCCGGGGCCGGGGTCGCGGCCGTGGACGGGGCCGGGGCCGAGGCCGCGGAGCTCGCGGAGGCA
AAGCCGAGGATAAGGAATGGATGCCTGTCACCAAGTTGGGCCGCCTGGTCAAAGACATGAAGATTAAATCTCTGGAGGAG
ATCTATCTTTTCTCTCTGCCCATCAAGGAATCTGAAATCATTGACTTTTTCCTGGGGGCCTCTCTCAAGGATGAGGTTTT
GAAGATTATGCCGGTGCAGAAGCAGACCCGTGCTGGCCAGCGCACCAGGTTCAAGGCATTTGTTGCTATTGGGGATTACA
ATGGTCACGTCGGTCTGGGTGTTAAGTGTTCCAAGGAGGTGGCCACTGCCATCCGTGGGGCCATCATCCTGGCCAAGCTC
TCCATTGTCCCTGTGCGCAGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCTTGCAAGGTGACAGGCCG
CTGTGGTTCTGTGCTGGTGCGTCTCATCCCCGCGCCCAGGGGTACTGGCATCGTCTCAGCACCTGTGCCTAAGAAGCTGC
TTATGATGGCTGGTATCGATGACTGCTACACCTCAGCTAGGGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACC
TTTGATGCCATCTCTAAGACTTACAGCTACCTGACCCCCGATCTCTGGAAGGAGACAGTGTTCACCAAGTCTCCCTATCA
GGAATTCACTGACCACCTTGTCAAGACCCACACCAGAGTCTCCGTGCAGAGAACCCAAGCTCCAGCTGTGGCTACAACAT
AG

Library Parental gene expression (RPM)
SRP051959_spleen 120 .76 RPM
SRP051959_skeletal_muscle 155 .73 RPM
SRP051959_lymph_node 130 .47 RPM
SRP051959_lung 76 .34 RPM
SRP051959_liver 169 .21 RPM
SRP051959_kidney 86 .90 RPM
SRP051959_heart 66 .13 RPM
SRP051959_colon 103 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002549 ortholog_one2many 1 retrogene
retro_acar_57,
Felis catus ENSFCAG00000029191 ortholog_one2many 6 retrogenes
retro_fcat_1245, retro_fcat_1328, retro_fcat_1606, retro_fcat_1610, retro_fcat_1737, retro_fcat_517,
Macropus eugenii ENSMEUG00000004508 possible_ortholog 2 retrogenes
retro_meug_156, retro_meug_2103,
Microcebus murinus ENSMICG00000012765 possible_ortholog 28 retrogenes
retro_mmur_1192, retro_mmur_1273, retro_mmur_1283, retro_mmur_1296, retro_mmur_1407, retro_mmur_1417, retro_mmur_1440, retro_mmur_153, retro_mmur_1613, retro_mmur_205, retro_mmur_210, retro_mmur_226, retro_mmur_230, retro_mmur_259, retro_mmur_266, retro_mmur_463, retro_mmur_672, retro_mmur_698, retro_mmur_742, retro_mmur_802, retro_mmur_824, retro_mmur_829, retro_mmur_875, retro_mmur_953, retro_mmur_966, retro_mmur_969, retro_mmur_981, retro_mmur_99,
Monodelphis domestica ENSMODG00000016077 possible_ortholog 1 retrogene
retro_mdom_536,
Sarcophilus harrisii ENSSHAG00000015213 possible_ortholog 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Tupaia belangeri ENSTBEG00000006726 possible_ortholog 30 retrogenes
retro_tbel_1023, retro_tbel_1059, retro_tbel_1105, retro_tbel_1179, retro_tbel_129, retro_tbel_1444, retro_tbel_1545, retro_tbel_1615, retro_tbel_1622, retro_tbel_1786, retro_tbel_1910, retro_tbel_2294, retro_tbel_2749, retro_tbel_2786, retro_tbel_2973, retro_tbel_3179, retro_tbel_3314, retro_tbel_3509, retro_tbel_3523, retro_tbel_3682, retro_tbel_3701, retro_tbel_392, retro_tbel_4373, retro_tbel_463, retro_tbel_4674, retro_tbel_481, retro_tbel_586, retro_tbel_603, retro_tbel_639, retro_tbel_647,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_274 95.14 84.30
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2. retro_cjac_317 92.58 96.25
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3. retro_cjac_1482 90.14 100.00
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4. retro_cjac_1585 91.28 100.00
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5. retro_cjac_1609 89.21 94.54
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6. retro_cjac_1712 83.84 99.66
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7. retro_cjac_1964 75.26 98.29
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8. retro_cjac_2201 93.43 97.27
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9. retro_cjac_2255 90.48 100.00
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10. retro_cjac_2284 83.85 97.61
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11. retro_cjac_2361 87.80 100.00
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12. retro_cjac_2493 97.95 100.00
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13. retro_cjac_2620 66.55 95.90
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14. retro_cjac_3741 80.59 90.44
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15. retro_cjac_4194 85.52 100.00
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Download FASTA sequences of all ENSCJAG00000015267 retrocopies