RetrogeneDB ID: | retro_tbel_463 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2130:279602..279995(+) | ||
Located in intron of: | ENSTBEG00000012037 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 63.31 % |
Parental protein coverage: | 79.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | LSIVPVRRGY-WGNKIGKPHTVPC-KVTGRCGSVLVRLIPAPRGTGIVSAPVPKK-LLMMAGIDDCYTSA |
LS.VP..R.Y....KIGKPH.VPC...T..CGSVLV..IP.PRG.GI.SAP..KK..L.M.G.D..YTS. | |
Retrocopy | LSTVPLQRSY<LEEKIGKPHSVPC<RGTTCCGSVLVHFIPVPRGAGIISAPMSKK<ALLMTGMDGSYTSV |
Parental | RGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFT-KSPYQEFTDHLVKTHTR-VSVQRTQAPAVATT |
.GC.A.L.NFAK..FDA.SK.YSYL....WK.TVFT.KS.YQE..DH.VKTH.R.V.VQRTQA.AVATT | |
Retrocopy | SGCIAILSNFAKGNFDAVSKIYSYLI--IWKGTVFT>KSLYQESDDHIVKTHKR<VFVQRTQALAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |