RetrogeneDB ID: | retro_tbel_1545 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5044:435154..435614(+) | ||
Located in intron of: | ENSTBEG00000016722 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 71.15 % |
Parental protein coverage: | 91.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | IGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAP |
..DYNGHV.L..KCSK.VATA..G.I.LAKLSIV.V.RG.WGNKI.KPHTV.CK.T..CGSVLV..IPA. | |
Retrocopy | VRDYNGHVSLHMKCSKKVATAVQGLIVLAKLSIVLVQRG*WGNKIKKPHTVLCKMTSCCGSVLVHFIPAS |
Parental | RGTGIVSAPVPKKLLMMAGIDD-CYTSARGCTATLGN-FAKATFDAISKTYSYLTPDLWKETVFTKSPYQ |
.GTGI..A.V.KKLL.MAGID..C.TSA.GCTATLGN...K.TFDAIS..YS.LTPDLWK.TVFTKS.YQ | |
Retrocopy | KGTGIFLALVAKKLL*MAGIDA<CCTSAQGCTATLGN<LPKVTFDAISQNYSCLTPDLWKKTVFTKSSYQ |
Parental | EFTDHLVKTHTRVSVQ |
EFTDHLVKTHT..... | |
Retrocopy | EFTDHLVKTHTSLHAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |