RetrogeneDB ID: | retro_tbel_392 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1929:539828..540332(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000003802 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 94.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
AFVAIGDYNGHVGLGVKCSKEVATAI.GAIIL.KLSIVPV.RGYWGNKIGKPHTVPCKVT.RCGSVLV.L | |
Retrocopy | AFVAIGDYNGHVGLGVKCSKEVATAI*GAIILTKLSIVPVQRGYWGNKIGKPHTVPCKVTSRCGSVLVHL |
Parental | IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSP |
IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSA.GCTATLGNF..ATFDAISKTYSYLTPDLWKET.FTKSP | |
Retrocopy | IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSAQGCTATLGNFTNATFDAISKTYSYLTPDLWKETMFTKSP |
Parental | YQEFTDHLVKTHTRVSVQRTQAPAVATT |
YQEFTDHLVKTHTRVSVQRTQAPAVATT | |
Retrocopy | YQEFTDHLVKTHTRVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |