RetrogeneDB ID: | retro_tbel_2786 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_119110:111758..112249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 71.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
AFVAIGDY.....L.V.CS.EVA....GAIILAKLSIV...RG.W.NKI.KP.TVPCKV...CGS..VRL | |
Retrocopy | AFVAIGDY---IDLSVNCSQEVAATT*GAIILAKLSIVALQRGFWRNKIIKPYTVPCKVASYCGSIVVRL |
Parental | IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYS-YLTPDLWKETVFTKS |
IP.PR.TGIVSAPVPKKLLM.AGI.DC..SA.GCT.T.GNF.K.TF..ISKTYS.YL.PDLWKET.FTKS | |
Retrocopy | IPPPRDTGIVSAPVPKKLLMIAGIKDCHHSAQGCTTTPGNFTKTTFVTISKTYS<YLIPDLWKETLFTKS |
Parental | PYQEFTDHLVKTHTRVSVQRTQAPAVATT |
.YQEFT..L.KTHT.VSV.R.QAPA.ATT | |
Retrocopy | FYQEFTEYL-KTHTTVSVERPQAPAMATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |