RetrogeneDB ID: | retro_tbel_639 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2632:44605..45090(+) | ||
Located in intron of: | ENSTBEG00000010750 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 76.19 % |
Parental protein coverage: | 98.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
A.VA.GDYN.HVGLG..CSKEVA.AI.GA.ILAKLSIVPV.RGYWG.KI..PHTVPCKVTG.CGSVLV.L | |
Retrocopy | ASVAAGDYNSHVGLGF*CSKEVANAIQGATILAKLSIVPVQRGYWGSKISRPHTVPCKVTGCCGSVLVCL |
Parental | IPAPRGTGIVSAPVP-KKLLMMAGIDDCYTSAR-GCTATLGNFAKATFDAISKTYSYLT-PDLWKETVFT |
.PAPRGTG..S...P...L.M..G.DDC.TSAR..CTATLGNFAKAT..AISKTYSYLT.P.LWKETVFT | |
Retrocopy | TPAPRGTG-ISTLCP>EVLMMVGGTDDCHTSAR<ACTATLGNFAKAT-NAISKTYSYLT<PVLWKETVFT |
Parental | KSPYQEFTDHLVKTHTRVSVQRTQAPAV |
KSPYQEFTDHL.KTH...SVQR.QAP.V | |
Retrocopy | KSPYQEFTDHLTKTHSD-SVQRPQAPVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |