RetrogeneDB ID: | retro_tbel_3314 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_136950:39829..40124(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 61.17 % |
Parental protein coverage: | 60.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSAR-GCTATLGNFAKATFDAISKT |
TV.C.V....GSVLV.LIPA.RG.GI...PVPK.LL.M.G...CYTS.R.GCT.T.GNFAKATF...S.. | |
Retrocopy | TVLC*VIKHFGSVLVCLIPASRGIGIILVPVPKRLLLMPG--NCYTSVR<GCTSTPGNFAKATFGITS*P |
Parental | YSYLTPD-LWKETVFTKSPYQEFTDHLVKTHTR |
Y..LTP..LWKET.FTKS...E.T.HL.KT.T. | |
Retrocopy | YNFLTPN<LWKETMFTKSCESECTGHLIKTCTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |