RetrogeneDB ID: | retro_tbel_2749 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_11810:183212..183710(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 68.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYW-GNKIGKPHTVPCKVTG-RCGSVLV |
A.V..GDY.G.VGLGVKC.K.VATA..GAIILAKLSIV.V.R..W.GNKI.KPHTVPCKVT...CGS.L. | |
Retrocopy | ASVILGDYSGNVGLGVKCPKVVATAL*GAIILAKLSIVSVQRVFW<GNKISKPHTVPCKVTS<QCGSALL |
Parental | RLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSAR-GCTATLGNFAKATFD-AISKTYSYLT-PDLWKETV |
.LIPA.RGTGI..APVPKKLL..AG.D..YTSA..GCT..LG.F..AT.....SKT.SYLT.PDLW.... | |
Retrocopy | CLIPASRGTGISLAPVPKKLLLLAGVDNVYTSAG<GCTLVLGSFTQATIG<SSSKTCSYLT<PDLWRVSM |
Parental | FTKSPYQEFTDHLVKTHTR-VSVQRTQAPAVATT |
FTKS.YQ.F.DHLV.TH.R.VSVQ.TQA.AVATT | |
Retrocopy | FTKSSYQGFSDHLV*THPR<VSVQKTQALAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |