RetrogeneDB ID: | retro_tbel_4674 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_97536:37840..38107(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 69.89 % |
Parental protein coverage: | 53.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LIPAP-RGTGIVSAPVPKKLLMMAGIDDCYTSA-RGCTATL-GNFAKATFDAISKTYSYLTPDLWKETVF |
LIPAP.R..GI.SAPVP..LL.MA..DD..TSA..GCTATL.G..A.AT...IS.TYS.LTPDL.KETVF | |
Retrocopy | LIPAP<RAPGILSAPVPRPLLPMACPDDGHTSA<LGCTATL<GDLARATSEPISRTYSLLTPDLRKETVF |
Parental | TKSPYQEFTDHLVKTHTRVSVQR |
TKSP.Q.FTDHL.K.HTRVS.QR | |
Retrocopy | TKSPCQQFTDHLIKAHTRVSMQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |