RetrogeneDB ID: | retro_tbel_3682 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_148321:38651..39124(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 88.05 % |
Parental protein coverage: | 94.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRG |
D.NGH.GLG.KCSKEV.TAIRGAIILAKLSIVPV.RGYWGNKI.K.HTVP.KVTG.CGSVLV.LIPAPRG | |
Retrocopy | DCNGHIGLGMKCSKEVVTAIRGAIILAKLSIVPVQRGYWGNKISKSHTVPSKVTGPCGSVLVILIPAPRG |
Parental | TGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSP-YQEFT |
TGIVSAP.PKKLLMM.GIDDCYT.A.GCTATL.NFAKATFD.ISKTYSYLTPDLWKETVFTKSP.YQEFT | |
Retrocopy | TGIVSAPIPKKLLMMVGIDDCYTLAWGCTATLDNFAKATFDVISKTYSYLTPDLWKETVFTKSP<YQEFT |
Parental | DHLVKTHTRVSVQRTQAPA |
.HLV.THTRVSVQRTQAPA | |
Retrocopy | NHLVMTHTRVSVQRTQAPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |