RetrogeneDB ID: | retro_tbel_2973 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_125603:59514..60020(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 61.63 % |
Parental protein coverage: | 98.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | FVAIGDYNGHVGLGVKCSKEVATAIRG-AIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
F..IGDY.GH.GL.VKCSK..AT.....AIILA.LS...V.RG...NK.GKPHT.P.KVT..C..VLV.L | |
Retrocopy | FFVIGDYSGHIGLAVKCSKQRATPSER<AIILAILSDILVWRGHSRNKVGKPHTIPYKVTICCDCVLVPL |
Parental | -IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSAR---GCTATLGNFAKATFDAISKTYSYLTPDLWK-ETV |
.IP..R..GIV..P..KKLL.MA....CYTS.....GC.ATLG.FAKAT..AISKTY.Y...D.WK.... | |
Retrocopy | >IPVSRSMGIVLVPASKKLLPMAVVYHCYTSTTAVTGCHATLGDFAKATVEAISKTYNYQSSDIWK<RQM |
Parental | FTKSPYQEFTDHLVKTHTRVSVQRTQAPAVAT |
FTKSPYQ..TDHLVK..TRVSVQR.QA.AVAT | |
Retrocopy | FTKSPYQKCTDHLVKNYTRVSVQRMQALAVAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |