RetrogeneDB ID: | retro_tbel_647 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2660:308045..308547(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 86.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTG-RCGSVLVR |
AFV.IGDYN.HVGLGVKCSKEVATAIRG.IILAKLSIVPV.RGYWGNKI.K.HTVPCKVTG.RCGSVL.. | |
Retrocopy | AFVTIGDYNSHVGLGVKCSKEVATAIRGVIILAKLSIVPVWRGYWGNKISKRHTVPCKVTG<RCGSVLAY |
Parental | LIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKS |
LIPAPRGTGIVSAPVPKKLLMMA.IDDCYTSARGC..TLGNF.KATF.AISKTYSYLTP.LWKE..FTKS | |
Retrocopy | LIPAPRGTGIVSAPVPKKLLMMAVIDDCYTSARGCPVTLGNFTKATFNAISKTYSYLTPELWKEIIFTKS |
Parental | PY-QEFTDHLVKTHTRVSVQRTQAPAVATT |
PY..EF.DHLVKTHTRVSVQ.TQ.P.VATT | |
Retrocopy | PY<LEFIDHLVKTHTRVSVQKTQDPTVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |