RetrogeneDB ID: | retro_tbel_3179 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_133174:9589..10064(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 68.12 % |
Parental protein coverage: | 94.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG |
N.H.GLG.KCSKEVAT...G.IILAKLS.VPV.RGYWGNKI.K...VPCKV...CGSVLV.LIP.PR..G | |
Retrocopy | NSHIGLGMKCSKEVATILQGTIILAKLSMVPVQRGYWGNKISKLCRVPCKVIDHCGSVLVCLIPVPRSIG |
Parental | IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQ-EFTDH |
I.SA.VPKKLL.MAG.D.CY.S.RGCT.TL.N.....F.AI.KT.SYLT...WKET.FTKSP.Q..FTDH | |
Retrocopy | I-SASVPKKLLLMAGTDNCYPSTRGCTTTLSNVTSTSFEAICKTCSYLTLNFWKETMFTKSPNQ>KFTDH |
Parental | LVKTHTRVSVQRTQAPAVAT |
L.KTH..VS.QRT...AVAT | |
Retrocopy | LIKTHNIVSMQRTHTQAVAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |