RetrogeneDB ID: | retro_tbel_1023 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3610:180418..180918(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 81.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | AFVAIGD-YNGHVG-LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLV |
AFV..GD..NGH.G..GVKCSKE.AT.IRGAIIL.KLS.VPV.RGYWGNKIGKPH.VPC.VTGRCGSVLV | |
Retrocopy | AFVTTGD<LNGHIG<WGVKCSKEAATTIRGAIILSKLSTVPVWRGYWGNKIGKPHPVPCQVTGRCGSVLV |
Parental | RLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSA-RGCTATLGNFAKAT-FDAISKTYSYLTPDLWKETVF |
RLIPAPRGTGIVSAPVPKKLL..AG.DD.YTSA...CTA.LG.FAKAT.FDAISKTYSYLTPD.W.ETVF | |
Retrocopy | RLIPAPRGTGIVSAPVPKKLLLTAGVDDRYTSA<LDCTAILGTFAKAT<FDAISKTYSYLTPDVWEETVF |
Parental | TKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
TKSPYQEFT..LVKTH.RVSVQR.Q.PAVATT | |
Retrocopy | TKSPYQEFTGRLVKTHARVSVQRIQVPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |