RetrogeneDB ID: | retro_tbel_2294 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_108660:28442..28946(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 95.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
AFVAIGDYNGHVGLGVKCSKEVATAI.GAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVT.RCGSVLV.L | |
Retrocopy | AFVAIGDYNGHVGLGVKCSKEVATAI*GAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTSRCGSVLVHL |
Parental | IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSP |
IPAPRGTGIVSAPVPKKLL.M.GIDDCYTSARGCTATLGNF..ATFDAISKTYSYLTPDLWKET.FTKSP | |
Retrocopy | IPAPRGTGIVSAPVPKKLLLMVGIDDCYTSARGCTATLGNFTNATFDAISKTYSYLTPDLWKETMFTKSP |
Parental | YQEFTDHLVKTHTRVSVQRTQAPAVATT |
YQEFTDHLVKTHTRVSVQRTQAPAVATT | |
Retrocopy | YQEFTDHLVKTHTRVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |