RetrogeneDB ID: | retro_tbel_1105 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3874:87564..88066(-) | ||
Located in intron of: | ENSTBEG00000005705 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 82.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
AFV.IG.YNGHVGLG.KCSKEVATAI.GAIIL.KLSIVPV.RGYWG.KIG..HTVP.KVTG.CG.VLV.L | |
Retrocopy | AFVIIGEYNGHVGLGMKCSKEVATAIQGAIILTKLSIVPVWRGYWGSKIGNLHTVPSKVTGCCGFVLVHL |
Parental | IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL-GNFAKATFDAISKTYSY-LTPDLWKETVFTK |
.P.PRGTGIVSAPVPKKLL.MAGIDDCYTSA.GC.ATL.G.F.KAT.DAISKT.SY...PDLWKET..TK | |
Retrocopy | LPVPRGTGIVSAPVPKKLLLMAGIDDCYTSA*GCIATL<GHFTKATLDAISKTCSY<SDPDLWKETMSTK |
Parental | SPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
SPYQE.TDHLVKTHTRVSVQRTQAPAVATT | |
Retrocopy | SPYQELTDHLVKTHTRVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |