RetrogeneDB ID: | retro_tbel_4373 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_79229:1227..1725(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTBEG00000006726 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 89.88 % |
Parental protein coverage: | 98.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWG-NKIGKPHTVPCKVTGRCGSVLVRLI |
VAIGDYNGHVGL..KCSKEVATAI.G.II.AKLSIVPVRRGYWG.N.IGKPHTVPCKVT..CGSVLV.LI | |
Retrocopy | VAIGDYNGHVGLDMKCSKEVATAI*GTII*AKLSIVPVRRGYWG>NNIGKPHTVPCKVTSHCGSVLVHLI |
Parental | PAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPY |
PA.RGTGIVS.PVPKKLL.MAGIDDCYTSARGCTATLGNF.KATFDAISKTYSYLTPDLWKETVF.KSPY | |
Retrocopy | PALRGTGIVSVPVPKKLLLMAGIDDCYTSARGCTATLGNFTKATFDAISKTYSYLTPDLWKETVFNKSPY |
Parental | QEFTDHLVKTHTRVSVQR-TQAPAVATT |
QEFTDHLVKTHTRVSVQR.TQ.PAVATT | |
Retrocopy | QEFTDHLVKTHTRVSVQR<TQPPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |