Parental gene:

H3F3B, ENSPPYG00000000168

Aliases:None
Description:Histone H3 [Source:UniProtKB/TrEMBL;Acc:H2N3J5]
Organism:Orangutan (Pongo abelii)
Coordinates:1:23599021..23606328(-)


>ENSPPYG00000000168
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCACTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAA
ACAGATCTGCGCTTCCAGAGCGCAGCTATCGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG
AACGTGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 20 .24 RPM
SRP007412_cerebellum 22 .01 RPM
SRP007412_heart 24 .50 RPM
SRP007412_kidney 37 .65 RPM
SRP007412_liver 30 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000004916 possible_ortholog 2 retrogenes
retro_cfam_1117, retro_cfam_622,
Canis familiaris ENSCAFG00000016119 possible_ortholog 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Dipodomys ordii ENSDORG00000008132 ortholog_one2one 9 retrogenes
retro_dord_238, retro_dord_283, retro_dord_43, retro_dord_589, retro_dord_678, retro_dord_685, retro_dord_719, retro_dord_765, retro_dord_774,
Erinaceus europaeus ENSEEUG00000013796 possible_ortholog 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 possible_ortholog 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Gorilla gorilla ENSGGOG00000022526 ortholog_one2one 11 retrogenes
retro_ggor_1179, retro_ggor_1809, retro_ggor_1837, retro_ggor_1919, retro_ggor_2003, retro_ggor_2837, retro_ggor_2956, retro_ggor_3082, retro_ggor_393, retro_ggor_736, retro_ggor_944,
Gadus morhua ENSGMOG00000014306 possible_ortholog 1 retrogene
retro_gmor_9,
Macaca mulatta ENSMMUG00000031483 possible_ortholog 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Mus musculus ENSMUSG00000016559 ortholog_one2one 18 retrogenes
retro_mmus_1058, retro_mmus_1188, retro_mmus_1269, retro_mmus_1535, retro_mmus_1635, retro_mmus_2021, retro_mmus_2083, retro_mmus_2377, retro_mmus_2771, retro_mmus_2867, retro_mmus_2972, retro_mmus_3002, retro_mmus_3144, retro_mmus_3477, retro_mmus_3667, retro_mmus_896, retro_mmus_961, retro_mmus_962,
Nomascus leucogenys ENSNLEG00000001577 ortholog_one2one 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000024312 possible_ortholog 11 retrogenes
retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii ENSOGAG00000025933 ortholog_one2one 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Pongo abelii ENSPPYG00000008636 within_species_paralog 1 retrogene
retro_pabe_2662,
Pteropus vampyrus ENSPVAG00000008459 ortholog_one2many 2 retrogenes
retro_pvam_218, retro_pvam_52,
Rattus norvegicus ENSRNOG00000003220 ortholog_one2one 4 retrogenes
retro_rnor_121, retro_rnor_191, retro_rnor_336, retro_rnor_44,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_323 76.64 100.00
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2. retro_pabe_1285 80.22 66.18
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3. retro_pabe_2151 60.38 77.21
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4. retro_pabe_2204 73.61 100.00
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5. retro_pabe_2252 75.00 91.18
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6. retro_pabe_2391 79.25 77.21
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7. retro_pabe_2679 80.58 100.00
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8. retro_pabe_2722 60.14 100.00
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9. retro_pabe_2805 64.71 98.53
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10. retro_pabe_2938 86.52 100.00
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11. retro_pabe_3078 63.37 73.53
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12. retro_pabe_3420 62.37 65.44
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13. retro_pabe_3637 94.57 94.85
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14. retro_pabe_3697 97.79 100.00
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Download FASTA sequences of all ENSPPYG00000000168 retrocopies