RetrogeneDB ID: | retro_pabe_2391 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:183300979..183301290(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSPPYG00000000168 | ||
Aliases: | None | ||
Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:H2N3J5] |
Percent Identity: | 79.25 % |
Parental protein coverage: | 77.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KSAPSTGGVKKPHRYRPGTVAL-REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA |
..APSTG.V.KPH.YRPGTVAL.REIRRYQKSTEL.IRKLPFQ.LVREIAQDFKT...FQS.A.G.LQEA | |
Retrocopy | QDAPSTGRVRKPHHYRPGTVAL<REIRRYQKSTEL-IRKLPFQCLVREIAQDFKTNMHFQSVAVGTLQEA |
Parental | SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR |
SEAYLVGLF.DTNLCAIHA..VT.MPKD.QL...IR | |
Retrocopy | SEAYLVGLFKDTNLCAIHAEHVTVMPKDNQLTHHIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 20 .24 RPM |
SRP007412_cerebellum | 0 .24 RPM | 22 .01 RPM |
SRP007412_heart | 0 .00 RPM | 24 .50 RPM |
SRP007412_kidney | 0 .00 RPM | 37 .65 RPM |
SRP007412_liver | 0 .00 RPM | 30 .02 RPM |