RetrogeneDB ID: | retro_rnor_191 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:23540605..23541007(-) | ||
Located in intron of: | ENSRNOG00000026328 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031251 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3c | ||
Ensembl ID: | ENSRNOG00000003220 | ||
Aliases: | None | ||
Description: | Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P84245] |
Percent Identity: | 80.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MART..TARK..GGKAPRKQLATKAA.KSAPSTG.VKK.H.YRPGTVALREIR..QK...LLI.KLPFQ. | |
Retrocopy | MARTRRTARKPSGGKAPRKQLATKAALKSAPSTGRVKKLHPYRPGTVALREIRHCQKFPTLLIPKLPFQQ |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
...E.AQDFKTDLRF.SAAIGALQEASE.YLVG.FEDTNLCA.H.K.VTIMPKDIQLARRIR.E.A | |
Retrocopy | ---EMAQDFKTDLRFRSAAIGALQEASETYLVGRFEDTNLCASHVKCVTIMPKDIQLARRIRAECA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .57 RPM |
SRP017611_liver | 0 .00 RPM | 17 .01 RPM |