RetrogeneDB ID: | retro_rnor_336 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:233306114..233306525(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000030548 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3c | ||
Ensembl ID: | ENSRNOG00000003220 | ||
Aliases: | None | ||
Description: | Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P84245] |
Percent Identity: | 97.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
MARTKQTARKSTGGKAPRKQLATKA..KSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR | |
Retrocopy | MARTKQTARKSTGGKAPRKQLATKASHKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR |
Parental | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI.GERA | |
Retrocopy | LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRILGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .49 RPM |
SRP017611_kidney | 0 .07 RPM | 36 .57 RPM |
SRP017611_liver | 0 .00 RPM | 17 .01 RPM |