RetrogeneDB ID: | retro_rnor_44 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:6427480..6427900(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000034127 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3f3c | ||
Ensembl ID: | ENSRNOG00000003220 | ||
Aliases: | None | ||
Description: | Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P84245] |
Percent Identity: | 95.93 % |
Parental protein coverage: | 90.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDL |
GK.P.KQLATKAARKSAPSTGGVKKPHRYRPGTVALREI..YQKSTELLI.KLPFQRLVREIAQDFKTDL | |
Retrocopy | GKPPSKQLATKAARKSAPSTGGVKKPHRYRPGTVALREICCYQKSTELLIQKLPFQRLVREIAQDFKTDL |
Parental | RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA | |
Retrocopy | RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .49 RPM |
SRP017611_kidney | 0 .14 RPM | 36 .57 RPM |
SRP017611_liver | 0 .00 RPM | 17 .01 RPM |