RetrogeneDB ID: | retro_ecab_202 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:179400431..179400926(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSECAG00000021882 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 62.07 % |
Parental protein coverage: | 68.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | SVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKK-QQMAREYREKIETELRDICN- |
S.TEQGAELS.EER.L.SVAYKN..GA.RSSW....SIEQ....A.KK..QMA.EYRE..E..LRDIC.. | |
Retrocopy | SATEQGAELSKEERSL-SVAYKNLAGAHRSSWKIIPSIEQMRQDARKK<EQMA*EYREEMESDLRDICK> |
Parental | DVLSLLEKFLIPNASQ-AESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKK-EMQPT |
D.LSL....L.PNAS..A.S..FYLK.KG.YY.Y.A.VAAGDDKKGI..QSQQAYQEAF.I....EMQ.T | |
Retrocopy | DLLSL--EVLDPNASK<AQSQDFYLKLKGEYYCYVAQVAAGDDKKGIMHQSQQAYQEAFQIRHR<EMQTT |
Parental | HPIRLGLALNFSV-FYYEILNSPEKACSLAKTAF |
HP....L...FSV..Y...LN.PEK.C.LA..AF | |
Retrocopy | HPLVPDLGCKFSV<VYCMSLNFPEKDCPLARIAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 42 .86 RPM |
SRP021940_cerebellum | 0 .05 RPM | 123 .96 RPM |
SRP021940_embryo | 0 .08 RPM | 157 .55 RPM |
SRP021940_placental_villous | 0 .05 RPM | 138 .46 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 68 .55 RPM |
SRP021940_testis | 0 .00 RPM | 147 .45 RPM |