RetrogeneDB ID: | retro_tsyr_720 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_180834:3376..4074(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000013087 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSTSYG00000006150 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 72.65 % |
Parental protein coverage: | 94.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKT- |
M....L.QKAKLAEQAERY.DMAA.MK...E.G.ELS.EERNLLSVAYKNVVG..R..WRV.SSIEQK.. | |
Retrocopy | MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSN |
Parental | -EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDK |
.EG.E.K....REYREK.ETELR..CN.VL.LL...LI..A..AES.VFYLKMKGDYYRYLAEVA.GD.K | |
Retrocopy | EEGSEEKGPEVREYREKVETELRGVCNTVLGLLDSHLIKQAGEAESQVFYLKMKGDYYRYLAEVATGDHK |
Parental | KGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSE |
K.I.D....AYQEA..ISKKEM.PT.PIRLGLALNFSVF.YEI.NSPE.A.SLAKT.FDEA.A.L.TLSE | |
Retrocopy | KRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSE |
Parental | ESYKDSTLIMQLLRD-NLTLWTSD |
.SYKDSTLIMQLLRD..LTLWT.D | |
Retrocopy | DSYKDSTLIMQLLRD<HLTLWTAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |