RetrogeneDB ID: | retro_ecab_624 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 23:46757372..46758101(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSECAG00000021882 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 7 |
Parental | MDKNE-LVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAY-KNVVGARRSSWRVVSSIEQK |
MDKN.....KAKL..QA..YDD.AAC.KS.TEQGAEL.N.E..LLSV.Y.KNV...R.S.WR..SSIE.K | |
Retrocopy | MDKNK<AGTKAKLTKQAQQYDDTAACKKSITEQGAELANDENHLLSVTY>KNVRSCR-SFWRATSSIELK |
Parental | TEGAEKKQQMAREYREKIETELR-DICNDVLSLLEKFLIP-NASQAESKVFYLKMKGDYYRYLAEVAAGD |
.E.AEKKQQM....R.KIE..LR...CNDV.SLLEK..IP.NASQAESK.F.LK.K.D.YRY.AEVAAG. | |
Retrocopy | REDAEKKQQMTHDNRRKIEIKLR>HTCNDVQSLLEKISIP<NASQAESKIFHLKTKRD*YRYMAEVAAGE |
Parental | DKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALN-FSVFYYEI-LNSPEKACSLAKTAFDEAIAELD |
DKKGIVD.S..AY.EAFEISKKEMQ.THPIRLGL.L..F.VFYYEI.LNS.EKACSLAKTAFDE.I.E.D | |
Retrocopy | DKKGIVDGSPKAYKEAFEISKKEMQWTHPIRLGLVLS<FPVFYYEI<LNSSEKACSLAKTAFDETITEFD |
Parental | TLSEESYKDSTLI-MQLLRDNLTLWTSDTQGDEAEAGEGGEN |
TLSE.SYKD.TLI..Q.LR.NLTLWT.DTQGD.AEAGE.GEN | |
Retrocopy | TLSEGSYKDGTLI<RQ*LRGNLTLWTWDTQGDKAEAGERGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 42 .86 RPM |
SRP021940_cerebellum | 0 .00 RPM | 123 .96 RPM |
SRP021940_embryo | 0 .00 RPM | 157 .55 RPM |
SRP021940_placental_villous | 0 .00 RPM | 138 .46 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 68 .55 RPM |
SRP021940_testis | 0 .06 RPM | 147 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_465 |
Sus scrofa | retro_sscr_222 |