RetrogeneDB ID:

retro_ggor_168

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:11:17426683..17427556(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000005409
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSGGOG00000009371
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_168
GACGCCGGTGCAGTTGGGGGGCCCGGAGGCCCTGGTGGCCCTGGGATGGGGAACCGCGGTGGCTTCCGCGGAGGTTTCGG
CAGTGGCATCTGGGGCCAGGGTAGCGGCCGTGGACTGGGCCTGGGCCGGGGCCGCAGAGCTCGCGGAGGCAAGGCCGAGG
ATAAGGAGTGGATGCCCGTCACCAAGCTGGGCCACTTGGTCAAAGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTC
TTCTCCCTGCCCATTAAGGAATCAGAGATCGTTGACTTTTTCCTGGGGGCTTCTCTCAAGGATGAGATTTTGAAGATTAT
GCCAGTGCAGAAGCAAACCCGTGCCAGCCAGCGCACCAGGTTCAAGGTGTTTGTTGCTGTCGGGGACTACAATGGCCACG
TCGGTCTGGGTGTTAAGTGCTCCAAAGTGGTGGCCACCGCCATCCGTGGGGCCATCATCCTGGCCAAGCTCTCTATTGTC
CCCGTGCGCAGAGGCTACTGGGGGAACAAGATGGGCAAGCCCCACACCGTCCCTTGCAAGGCGACAGGCCGCTGCGGCTC
TGTGCTGGTGCGCCTCATCCCTGCACCCAGGGGCACTGGCATCGTCTCCGCACCTGTGCCCAAGAAGCTGCTCATGATGG
CTGGTATCGATGACTGCTACACCTCAGACCGGGGCTGCACTGCCACCCTGGGCAACTTCACCAAGGCCACCTTTGATGCA
ATTTCTAAGACCTACAGCTACCTGACCCCTGACCTCTGGAAGGAGACTGTATTTACCAAGTCTCCCTATCAGGAATTCAC
TGACCACCTCGTCAAGACCCACACCAGAGTCTCCGTGCAGCGGACCCAGGCTCCAGCTGTGGCTACAACATAG

ORF - retro_ggor_168 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.79 %
Parental protein coverage: 98.98 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDM
DAGA.GGPGGPGGPGMGNRGGFRGGFGSGI.G.G.GRG.G.GRGR.ARGGKAEDKEWMPVTKLG.LVKDM
RetrocopyDAGAVGGPGGPGGPGMGNRGGFRGGFGSGIWGQGSGRGLGLGRGRRARGGKAEDKEWMPVTKLGHLVKDM
ParentalKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKC
KIKSLEEIYLFSLPIKESEI.DFFLGASLKDE.LKIMPVQKQTRA.QRTRFK.FVA.GDYNGHVGLGVKC
RetrocopyKIKSLEEIYLFSLPIKESEIVDFFLGASLKDEILKIMPVQKQTRASQRTRFKVFVAVGDYNGHVGLGVKC
ParentalSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKL
SK.VATAIRGAIILAKLSIVPVRRGYWGNK.GKPHTVPCK.TGRCGSVLVRLIPAPRGTGIVSAPVPKKL
RetrocopySKVVATAIRGAIILAKLSIVPVRRGYWGNKMGKPHTVPCKATGRCGSVLVRLIPAPRGTGIVSAPVPKKL
ParentalLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQ
LMMAGIDDCYTS.RGCTATLGNF.KATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQ
RetrocopyLMMAGIDDCYTSDRGCTATLGNFTKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQ
ParentalRTQAPAVATT
RTQAPAVATT
RetrocopyRTQAPAVATT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .14 RPM 43 .93 RPM
SRP007412_cerebellum 0 .08 RPM 30 .06 RPM
SRP007412_heart 0 .06 RPM 68 .48 RPM
SRP007412_kidney 0 .20 RPM 90 .00 RPM
SRP007412_liver 0 .13 RPM 206 .12 RPM
SRP007412_testis 0 .21 RPM 50 .76 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_168 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_168 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 8 parental genes, and 78 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000025491 retrocopy
Felis catus ENSFCAG000000291916 retrocopies
Gorilla gorilla ENSGGOG00000009371 5 retrocopies
Macropus eugenii ENSMEUG000000045082 retrocopies
Microcebus murinus ENSMICG0000001276528 retrocopies
Monodelphis domestica ENSMODG000000160771 retrocopy
Sarcophilus harrisii ENSSHAG000000152135 retrocopies
Tupaia belangeri ENSTBEG0000000672630 retrocopies



Copyright © RetrogeneDB 2014-2017