RetrogeneDB ID: | retro_sara_627 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_244075:149985..150419(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000005798 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.4 % |
Parental protein coverage: | 95.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKEL-RQKYNVRSMPIRKDDEVQV-VRGHYKGQQIG |
MKFNPF.T.D.S.N.KR.FNAPSHI..KIMSSPLSK.L.RQK.NV.S.PI..DD.VQV.V.GH..GQQIG | |
Retrocopy | MKFNPFETFDQSNNCKRQFNAPSHICSKIMSSPLSK*L>RQKQNV*SVPIQRDD*VQV<VSGH-RGQQIG |
Parental | KVVQVYRKKYVIYIERVQRE-KANGTTVHVGIHPSKVV-ITRLKLDKD-RKKILERKAKSRQVGKEKNIR |
...QVYRKKYV.Y.E.VQ.E.K.N....HVGIHPS.VV.ITR..LDKD..K.....K............R | |
Retrocopy | NIFQVYRKKYVSYTEQVQQE>KKNSIIAHVGIHPSMVV>ITRVRLDKDHEKRSFNTKPSLTKWEMKRAYR |
Parental | KKR-LRRCR |
.K..LRRCR | |
Retrocopy | RKKYLRRCR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |