RetrogeneDB ID: | retro_sara_334 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_169325:476..910(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000012433 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000005798 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.95 % |
Parental protein coverage: | 96.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSH-IRRKIMSSPLSKELRQKYNVR-SMPIRKDDE-VQVVRGHYKGQQI |
MKFNPF.T...SK..KR.F.AP....R.KIMSS.L.KE.RQKYN...SM.I.KD.E.VQVV.GH.KGQQ. | |
Retrocopy | MKFNPFITCLSSKYHKRPFKAPCP<VRGKIMSS-LVKERRQKYNIA<SMLILKDTE>VQVVGGHCKGQQL |
Parental | GKVVQVY-RKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDR-KKILERKAKSRQVGKEK-NI |
.K.VQVY.RKK..I...RVQ.E.AN.TTVH.G...SK.VITRL.LDKD.....L..K.......K.K.N. | |
Retrocopy | *KLVQVY>RKKCIICKQRVQQEMANDTTVHEGVQTSKAVITRLILDKDX<XXXLSAKSNLDKLEKRKANT |
Parental | RKKRLRRCRNK |
RK..LR.C.N. | |
Retrocopy | RKNCLRKCKNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |