RetrogeneDB ID: | retro_vpac_26 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1026:66995..67405(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000000279 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.19 % |
Parental protein coverage: | 88.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDR-SKNRKRHFNAPSHIRRKIMSSPLSKELRQKY-VRSMPIRKDDEVQVVRGHYK-GQQIG |
MKFNPFV..DR.SKN.KRHFNAPSHIRR..MSSPLSKEL.QKY.....PI.KDD.VQVVRGH.K.GQQ.G | |
Retrocopy | MKFNPFVNCDR>SKNHKRHFNAPSHIRRNLMSSPLSKELSQKYNFPTTPI*KDDDVQVVRGHCK>GQQVG |
Parental | KVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKNTKK |
KVVQVYRKK.V...E.VQREK.N.TTVHVGIHP.KVVITRL..D.DR.KIL.R.AKS.Q.GKE....K | |
Retrocopy | KVVQVYRKKDVTHTEQVQREKVNSTTVHVGIHPRKVVITRLQRDRDREKILKREAKSPQAGKETGKYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |