RetrogeneDB ID:

retro_tsyr_785

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_200573:4296..4643(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL31
Ensembl ID:ENSTSYG00000005427
Aliases:None
Description:ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]


Retrocopy-Parental alignment summary:






>retro_tsyr_785
CCTTCAAAGAAGGGTGGTGAGAAGATGTACCATCCTGCCATCAGTGAGATGGTTGCCTGAGAAAAAGCTATCAATATACA
CAGGTGAATCCGTTGAGTGGGCTTTAGGAAGCATACTCATTGGGCATTCCACTATATTTAGAAAATTGCCATGAATGAAA
TGAGAAGTCCAAATGTGCACATTGATACCAAGCTTTAAAAAGCTGTCTGGGTAAAATGGTAAGAAATGTTTTCTGTCATA
TCCATGAGTGGTGGTCCAGAAAATATAATGAGAATGAAGATTCGCCTAACAAGCTTTATACTTTGGTTATCTATGTATCT
TTTGCCACTTTCATAAATTTACAAAGT

ORF - retro_tsyr_785 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 55.93 %
Parental protein coverage: 93.6 %
Number of stop codons detected: 5
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAV
P.KKGGEK.....AI.E.V..E..INIH..I..VGF.K....A...I.K.AM.EM..P.V.IDT.L.KAV
RetrocopyPSKKGGEKMY-HPAISEMVA*EKAINIHR*IR*VGFRKHTHWAFHYI*KIAMNEMRSPNVHIDTKL*KAV
ParentalWAKG-IRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT
W.K...RNV...I....SRK.NE.EDSPNKLYTLV.YV...TF.NLQ.
RetrocopyWVKW<VRNVFCHIHEWWSRKYNENEDSPNKLYTLVIYVSFATFINLQS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_785 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 96 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000197019 retrocopies
Latimeria chalumnae ENSLACG000000136031 retrocopy
Macropus eugenii ENSMEUG000000009638 retrocopies
Myotis lucifugus ENSMLUG0000000250721 retrocopies
Oryctolagus cuniculus ENSOCUG000000023929 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000001090215 retrocopies
Tarsius syrichta ENSTSYG00000005427 33 retrocopies



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