RetrogeneDB ID: | retro_itri_1140 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393384.1:946339..946670(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000010902 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.47 % |
Parental protein coverage: | 92.8 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | APAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFK-KRAPRALKEIRKFAMKEMGT-PDVRIDTRLN |
.P.K.GG..KKG......VVT.E.TIN..K...G.GFK.K..P..LKEI.KFA.KEMGT.PD..IDTRLN | |
Retrocopy | SPHKIGG--KKGHLVNSKVVT*ERTINFSKHTYGMGFK<KMCP*SLKEI*KFATKEMGT<PDICIDTRLN |
Parental | KAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNL |
K..WAKG.R.....I.V.L.RK.NE.E.SPN..YT..T.VPVTTFK.L | |
Retrocopy | KDFWAKGVRHF---IHV*LFRKHNEAEYSPNEFYTFLTNVPVTTFKKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |