RetrogeneDB ID: | retro_eeur_491 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_325849:1000..1312(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSEEUG00000007173 | ||
Aliases: | None | ||
Description: | FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220] |
Percent Identity: | 74.04 % |
Parental protein coverage: | 56.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LVDTNFINFSIKAKLDLVQSMM-DCLYAKCIPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKG |
LVDTNFINFS.KAKLD....M...CLYAKCIP.ITDCVMAE.EK..QK..VA...AKD.RF..LPCTHKG | |
Retrocopy | LVDTNFINFSTKAKLDKLMVMYAKCLYAKCIPGITDCVMAEMEKWEQKCQVAPSMAKDLRFKCLPCTHKG |
Parental | TYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIP |
.YADDCLVQRVTQ.KCYIVAT..RDLKR..RK.P | |
Retrocopy | PYADDCLVQRVTQRKCYIVATIARDLKRKLRKSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .63 RPM |
SRP017611_liver | 0 .00 RPM | 2 .73 RPM |