RetrogeneDB ID: | retro_rnor_771 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:99850605..99851183(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fcf1 | ||
Ensembl ID: | ENSRNOG00000004723 | ||
Aliases: | Fcf1, RGD1310899 | ||
Description: | rRNA-processing protein FCF1 homolog [Source:RefSeq peptide;Acc:NP_001037700] |
Percent Identity: | 75.88 % |
Parental protein coverage: | 98.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHIL |
MGKQKKTRKYA.MK.MLSLRDERLKEK.RLK.KK.EK.D.SA.KER..P.HPS..F.Q.NTQLGPP...L | |
Retrocopy | MGKQKKTRKYASMK*MLSLRDERLKEKVRLKTKKREKEDSSAQKERS-PKHPSFMFSQNNTQLGPPDRVL |
Parental | VDTNFINFSIK-AKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFDRLPCTHKGT |
VD.NFI.FSIK.AKLDLVQSMM.CL.AKCIPCI.DCV.AEIEKLGQ.YR..LRI.KDP.FD.LPCTHKGT | |
Retrocopy | VDDNFIHFSIK>AKLDLVQSMMNCLCAKCIPCIIDCVKAEIEKLGQTYRMTLRITKDPWFDQLPCTHKGT |
Parental | YADDCLVQRVT-QHKCYIVATVDRDLKRRIRKIPGVPIMYLSNHRYNI-ERMPDDYGAP |
YADDCLVQRVT..HK.YIVATVD.DLKRRI.KI......Y.SNHR..I..RMPDDY.AP | |
Retrocopy | YADDCLVQRVT<LHKRYIVATVDPDLKRRIWKI--LALLYISNHR*KI<RRMPDDY*AP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .77 RPM |
SRP017611_liver | 0 .00 RPM | 11 .90 RPM |