RetrogeneDB ID: | retro_pabe_326 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:179406282..179406871(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSPPYG00000005991 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5RFQ0] |
Percent Identity: | 81.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILV |
GKQ.KTRKYATMKRMLSLRDQRL...............PS.LKEREVPQHPS.LFFQYNTQLGPPYHILV | |
Retrocopy | GKQNKTRKYATMKRMLSLRDQRLXXXXXXXXXXXXXXXPSTLKEREVPQHPSRLFFQYNTQLGPPYHILV |
Parental | DTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYA |
DTNFINFSIKAKLDL.QSMMDCLYAKCIPCITDCVMAEIEKL.QKY.VALRI.KDPRFE.LPC.H.GTYA | |
Retrocopy | DTNFINFSIKAKLDLAQSMMDCLYAKCIPCITDCVMAEIEKLEQKYQVALRITKDPRFELLPCAHQGTYA |
Parental | DDCLVQR-VTQHK-CYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF |
DDCLVQ...TQ...CYI.ATVD.DLKRRI.KIPGVPIMYISNHRYNIE.M.DDYGAP.F | |
Retrocopy | DDCLVQK<ITQRS<CYIRATVDWDLKRRICKIPGVPIMYISNHRYNIEWMSDDYGAP*F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .74 RPM |
SRP007412_heart | 0 .00 RPM | 3 .34 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .67 RPM |
SRP007412_liver | 0 .03 RPM | 3 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_383 |
Pan troglodytes | retro_ptro_297 |