RetrogeneDB ID: | retro_pabe_214 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:5968710..5969156(+) | ||
Located in intron of: | ENSPPYG00000000061 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSPPYG00000005991 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5RFQ0] |
Percent Identity: | 91.33 % |
Parental protein coverage: | 75.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVD |
K.KKTR.YATMK..LSLRDQRLKEKDRLKPK.KEKKDPS.LKEREV.QHPSCLF.QYNTQLGPPYHILVD | |
Retrocopy | KKKKTRNYATMKQTLSLRDQRLKEKDRLKPKEKEKKDPSPLKEREVRQHPSCLFCQYNTQLGPPYHILVD |
Parental | TNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYA- |
TNFINFSIKAKLDLVQSMMDCLY.KCIPCITDCVMAEIEKLGQKYRVALRI.KDPRFERLPCTH.GTYA. | |
Retrocopy | TNFINFSIKAKLDLVQSMMDCLYVKCIPCITDCVMAEIEKLGQKYRVALRITKDPRFERLPCTHTGTYA< |
Parental | DDCLVQRVTQ |
.DCLVQRVTQ | |
Retrocopy | TDCLVQRVTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 3 .76 RPM |
SRP007412_cerebellum | 0 .12 RPM | 4 .74 RPM |
SRP007412_heart | 0 .00 RPM | 3 .34 RPM |
SRP007412_kidney | 0 .13 RPM | 5 .67 RPM |
SRP007412_liver | 0 .06 RPM | 3 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_535 |
Pan troglodytes | retro_ptro_401 |
Macaca mulatta | retro_mmul_459 |
Callithrix jacchus | retro_cjac_1711 |