RetrogeneDB ID: | retro_pabe_2437 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:64747449..64748041(+) | ||
Located in intron of: | ENSPPYG00000014764 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSPPYG00000005991 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5RFQ0] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILV |
GKQKKTRKYATMKRMLSLRDQRL.EKD.LKPKKKEKKDPS.LKERE.PQHP.CLFFQYNTQLGPPYHIL. | |
Retrocopy | GKQKKTRKYATMKRMLSLRDQRLTEKDKLKPKKKEKKDPSMLKEREIPQHPTCLFFQYNTQLGPPYHILI |
Parental | DTN-FINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTY |
DTN.FINFSIKAK.DLVQSMMDCLY.K.IPCITDCVM.EIEKL.QKY.VALRI.KDP.FE..PCTHKGTY | |
Retrocopy | DTN>FINFSIKAKPDLVQSMMDCLYTKYIPCITDCVMPEIEKLEQKYGVALRITKDPTFEG*PCTHKGTY |
Parental | ADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF |
ADDCLVQ.V.QHKCYIVATVDRDLKRRI.KIPGVPIMYISNHRYNIE.MPDDYGAP.F | |
Retrocopy | ADDCLVQTVIQHKCYIVATVDRDLKRRIPKIPGVPIMYISNHRYNIE*MPDDYGAP*F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 3 .76 RPM |
SRP007412_cerebellum | 0 .12 RPM | 4 .74 RPM |
SRP007412_heart | 0 .15 RPM | 3 .34 RPM |
SRP007412_kidney | 0 .17 RPM | 5 .67 RPM |
SRP007412_liver | 0 .06 RPM | 3 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3040 |
Pan troglodytes | retro_ptro_1998 |