RetrogeneDB ID: | retro_hsap_3912 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:138883301..138883888(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000271537 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSG00000119616 | ||
Aliases: | FCF1, Bka, C14orf111, UTP24 | ||
Description: | FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220] |
Percent Identity: | 84.26 % |
Parental protein coverage: | 98.99 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLG-PPYHILV |
.QKK.R.YATMK.MLSLRDQRL.E.DRLKPKK.EKKD...LKEREVPQHPSCLFFQYNTQLG.PPYHILV | |
Retrocopy | RQKKSRNYATMKPMLSLRDQRLEERDRLKPKKEEKKDSNILKEREVPQHPSCLFFQYNTQLG<PPYHILV |
Parental | DTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYA |
D.NFINFSIKAK.DLVQSM.DCL.A.CIP.ITDCVMAEIEKLGQKY.VALRI.KDPRFE.LPCTHKGTYA | |
Retrocopy | DSNFINFSIKAKPDLVQSMTDCL*ATCIPYITDCVMAEIEKLGQKY*VALRISKDPRFE*LPCTHKGTYA |
Parental | DDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF |
DDCLVQR.TQHK.YIVATVD.D.KRRI.KI.GVPI.YISNHRYNIE.MPDDYG...F | |
Retrocopy | DDCLVQRETQHKWYIVATVDQDPKRRICKILGVPITYISNHRYNIE*MPDDYGVLGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .16 RPM | 30 .15 RPM |
bodymap2_adrenal | 0 .55 RPM | 30 .25 RPM |
bodymap2_brain | 0 .16 RPM | 22 .03 RPM |
bodymap2_breast | 0 .10 RPM | 40 .53 RPM |
bodymap2_colon | 0 .00 RPM | 40 .24 RPM |
bodymap2_heart | 0 .09 RPM | 21 .80 RPM |
bodymap2_kidney | 0 .46 RPM | 29 .99 RPM |
bodymap2_liver | 0 .00 RPM | 16 .56 RPM |
bodymap2_lung | 0 .00 RPM | 19 .23 RPM |
bodymap2_lymph_node | 0 .13 RPM | 23 .79 RPM |
bodymap2_ovary | 1 .25 RPM | 55 .13 RPM |
bodymap2_prostate | 0 .00 RPM | 44 .01 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 16 .73 RPM |
bodymap2_testis | 0 .13 RPM | 37 .16 RPM |
bodymap2_thyroid | 0 .08 RPM | 71 .30 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 53 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2660 |
Pongo abelii | retro_pabe_3188 |
Macaca mulatta | retro_mmul_1737 |
Callithrix jacchus | retro_cjac_3094 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .19 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .11 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .06 RPM |
FIN_HG00349 | 0 .14 RPM |
FIN_HG00375 | 0 .10 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .08 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .12 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .07 RPM |
YRI_NA18916 | 0 .13 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .06 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .04 RPM |