RetrogeneDB ID: | retro_pabe_3188 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:136420075..136420665(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSPPYG00000005991 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5RFQ0] |
Percent Identity: | 83.84 % |
Parental protein coverage: | 99.49 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLG-PPYHILV |
.QKK.R.YATMK.MLSLRDQRLKE.DRLK.KK.EKKD...LKEREVPQHPSCLFFQYNTQLG.PPYHILV | |
Retrocopy | RQKKSRNYATMKPMLSLRDQRLKERDRLKSKKEEKKDSNILKEREVPQHPSCLFFQYNTQLG<PPYHILV |
Parental | DTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYA |
D..FINFSIKAK.DLVQSMMDCL.A.CIP.ITDCVMAEIEKLGQ.Y.VALRI.KDPRFE.LPCTHKGTYA | |
Retrocopy | DSSFINFSIKAKPDLVQSMMDCL*ATCIPYITDCVMAEIEKLGQNY*VALRISKDPRFE*LPCTHKGTYA |
Parental | DDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDY-GAPRF |
DDCLVQR.TQHKCYIVATVD.DLKRRI.KI.GVPIMYISNHRYNIE.MP....G.P.F | |
Retrocopy | DDCLVQRETQHKCYIVATVDQDLKRRICKILGVPIMYISNHRYNIE*MPGSFCGVPGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .76 RPM |
SRP007412_cerebellum | 0 .36 RPM | 4 .74 RPM |
SRP007412_heart | 0 .00 RPM | 3 .34 RPM |
SRP007412_kidney | 0 .23 RPM | 5 .67 RPM |
SRP007412_liver | 0 .00 RPM | 3 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3912 |
Pan troglodytes | retro_ptro_2660 |
Macaca mulatta | retro_mmul_1737 |
Callithrix jacchus | retro_cjac_3094 |